Notes

Bug fix: Reaction ID editing

Wednesday, May 2, 2007

A bug regarding reaction ID editing has been identified and fixed.

Updated database download instructions, alternative installer download versions removed

Wednesday, April 11, 2007

(1) The KEGG website has been modified by the KEGG developers with new links to download resources. The command Help/Database Status has been modified to reflect these changes.

(2) The Info

Bug fix: printing support

Thursday, March 29, 2007

(1) The print command has been modified. Printing should now work on all operating systems.

Bug fix: shortest paths, updated organism list

Tuesday, March 13, 2007

(1) The shortest paths calculation (not the weighted shortest path) did not work correctly. Sometimes not only the shortest paths between the selected nodes was calculated, but additionally a path

Bug fix: status line information, zoom improvement

Thursday, December 14, 2006

The new version fixes a recent bug, which prevented the correct display of entry information (e.g. enzyme information). The status bar should now display the corresponding enzyme or compound

Integrated RSS reader, updated organism list annotation

Montag, 11. Dezember 2006

(1) A new feature, a RSS reader, which points to this news page has been added to KGML-ED.

(2) The organism list annotation has been updated.

The Mac OS X install disk and the Windows setup has

Changes to KEGG pathway group processing

Montag, 27. November 2006

With the new update of the Web Start version and also of the Windows setup and Mac OS X installer disk, the code for grouping the KEGG pathways in the “Load” tab has been changed. Before, a manually

Small improvements (collapse operation and overview-graph generation)

Mittwoch, 8. November 2006

(1) When performing a “Collapse” operation, the folding of a loaded pathway into a single map-reference node, the reference node will be placed at the center of the collapsing pathway. When this

Improved pathway integration (loading of several pathways in one step)

Donnerstag, 2. November 2006

KGML-ED has been improved with a new feature. It is now possible to load several files or pathways in one step into a single, integrated view.

Instead of exploring several pathway step by step by

Processing of duplicate entries, merging multiple documents, Vista compatibility

Sonntag, 22. Oktober 2006

For the improved processing of “duplicate entries” (multiple entries with the same ID), one command has been extended, and one command has been newly added:

(1) The command “Condense into single

Processing of gene-nodes

12. Oktober 2006

(1) A new feature has been included: from the “Process” tab, under “Select Graph Elements”, a new button “Select Genes” is available. By clicking this command button, all nodes with type “gene” are

Bug fixes and new features 2

13. September 2006

(1) The tree-layout commands have been removed from the layout command list, as it turned out that they do not work reliably on certain graph structures. They may be added again with future

Bug fixes and new features

7. September 2006

(1) A bug has been identified and fixed: The Pajek file export has been modified to work correctly with the Pajek program. The file is now saved with Windows line break encoding and the indices

Updates

5. September 2006

Some issues have been identified.

(1) The button commands for selecting the map title-nodes and the map reference nodes did not recognize the title-nodes correctly in case the node label contains

Test Release / Website

26. Juli 2006

The website for KGML-ED is now online. Currently, the website and the system is in not yet finished and still a work-in-progress.